Today I got a call from the dealer, they were able to fix the problem, turned out to be a simple thing. They said the “neutral detent” was sticking and the clutch was stuck. They freed up the gears and ran it, worked fine. Picked up the bike and it seems to be working fine. Had a long talk with them about my concerns regarding this happening again, they said it was a “freak occurrence” and shouldn’t happen again. They also recommended against coasting in neutral, because the oil bath isn’t able to splash on all the gears/clutch when it’s not in gear.
Rode the 30 miles home without any problem, hopefully this is the end of it. Didn’t have to pay anything, it was completely under warranty.. only bad part of this was the 3 week downtime and crappy service.